863 Open source projects that are alternatives of or similar to RNAseq_titration_results

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

Parser and database to index the terpene profile of different strains of Cannabis from online databases

R package for analyzing single-cell RNA-seq data

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Analysing Capture Seq Count Data

Aggregate results from bioinformatics analyses across many samples into a single report.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

TCGA data acquisition and processing for Project Cognoma

Analysis pipelines for sequencing data

3D hotspot mutation proximity analysis tool

Provide R access to the NCI Genomic Data Commons portal.

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

A fast 23andMe genome text file parser, now superseded by arv

The Archives Unleashed Toolkit is an open-source toolkit for analyzing web archives.

Analysis of file (doc, pdf, exe, ...) in deep (emmbedded file(s)) with clamscan and yara rules

A Simple PE File Heuristics Scanners

A light JavaScript client for Keen

Static analysis framework for .NET programs.

Mapping-Assisted Targeted-Assembly for Metagenomics

📊 Identify cell types and pathways affected by genetic risk loci.

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Inference of switch-like differential expression along single-cell trajectories

BLACKPHENIX is an open source malware analysis automation framework composed of services, scripts, plug-ins, and tools and is based on a Command-and-Control (C&C) architecture

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

exploratory and interactive microbiome analyses based on heatmaps

🚦 Run Picard on BAM files and collate 90 metrics into one file.

No description or website provided.

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

No description or website provided.

Introduction to the Unix Shell for biologists

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Regulatory networks with Direct Information in python

xarray interface for bpch files

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

implementing an end-to-end tweets ETL/Analysis pipeline.

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Tool for plotting rd curves from output of video coding test model software

Sometimes you want to normalize data before saving it to the database like down casing e-mails, removing spaces and so on. This Rails plugin allows you to do so in a simple way.

Multi-task deep learning framework for multi-omics data analysis

A library to build and execute typed scientific workflows

🐭 Explain Explainer for MySQL Queries.

Fast motif matching in R

Project metadata manager for PEPs in Python

Compare different differential abundance and expression methods

Web Application for the Ohloh Stack.

Curated list of bioinformatics formats and publications

Predict plasmids from uncorrected long read data

My personal Automated Malware Analysis Sandboxes and Services

Analyze, visualize and process sound field data recorded by spherical microphone arrays.

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

React rerelease of MSAViewer

Extracting biomedical relationships from literature with Snorkel 🏊

Build and maintain multiple custom conda environments all in once place.

Examples using Clustergrammer2 to explore high-dimensional datasets.

A curated list of awesome bioinformatics software.

Genotyping of segregating mobile elements insertions

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.