168 Open source projects that are alternatives of or similar to spectral_connectivity

Curate, visualize, annotate, and share your behavioral ephys data using Python

Graph theory analysis of brain MRI data

A Python-based module for creating flexible and robust spike sorting pipelines.

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Elephant is the Electrophysiology Analysis Toolkit

Python-based module with spike sorter wrappers and a simple API for running them.

A .NET Standard library for computing the Fast Fourier Transform (FFT) of real or complex data

Helping researchers in routine procedures for data collection

All things Miniscope v4

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

One-Shot Object Appearance Learning using Spiking Neural Networks

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

Automated 3D cell detection and registration of whole-brain images

Just Another Tool for Online Studies

A package for data-driven validation of neuron and ion channel models using SciUnit

Modules for processing extracellular electrophysiology data from Neuropixels probes

Keras for Science

Resources for data driven neuroscientists.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

GUI for a Vocal Remover that uses Deep Neural Networks.

SoundCloud music player with equalizer

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

MATLAB/Octave GIfTI Library

Deep learning in a spiking neural network using segregated dendrites.

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

Neuroimaging in Julia

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Main TVB codebase

Train PyTorch Models using the Genetic Algorithm with PyGAD

This repository includes all Basic Algorithms related to image Processing, these are almost without Build-in Functions

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Nuerapse simulations for SNNs

A toolbox for inferring spikes from calcium traces.

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Audio Classification using Image Classification

A virtual optogenetics laboratory

PyoMyo - Python Opensource Myo armband library

📊 Gene expression in neuroexpresso database

Segmentation of 3D shapes in a common anatomical space

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

A review of papers proposing novel GNN methods with application to brain connectivity published in 2017-2020.

Code Generation Framework For NEURON MODeling Language

Core methods and structures for neuroscience research in Julia.

Python toolbox for Heart Rate Variability

A lightweight python module to interact with atlases for systems neuroscience

Software platform for clinical neuroimaging studies

Taking an audio signal (wav) and converting it into a spectrogram. Written in Go programming language.

Python 3 library for analysis of neuroanatomical data

medical image visualization library and development toolkit

Dynamic Time Warping in Python / C (using ctypes)

Spiking neural network system

Multi-modal Image Registration And Connectivity anaLysis

NEURON User Interface

C++ lsl library for multi-modal time-synched data transmission over the local network

Example with Cortex V2 API

AntroPy: entropy and complexity of (EEG) time-series in Python

Method container for computational neuroscience on brains.

A walkthrough of how to make spectrograms in python that are customized for human speech research.

The open source toolbox for reproducible diffusion MRI-based microstructure estimation