12 open source projects by seandavi

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach

workshop platform provider for running docker containers on kubernetes

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Fork of https://code.google.com/p/ngs-analysis

Machine learning use cases for teaching

Git mirror of Bioconductor SRAdb package

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

R Interface to the NCBI SRA metadata

Computable build reports, package metadata, and download stats from the Bioconductor project