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All Programming Languages → Singularity

Top 16 Singularity open source projects

1. gdsctools

Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )

✭ 27

Jupyter Notebook python CSS HTML Singularity

2. containerize-conda

Turn an existing conda environment into a Docker or Singularity container

✭ 20

shell Singularity Dockerfile

3. fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

✭ 40

matlab Jupyter Notebook python shell Dockerfile Singularity HTML neuroimaging fmri bids

4. github-ci

An example GitHub Action (CI) to build a Singularity container

✭ 46

Singularity container singularity singularity-ci github-ci

5. souporcell

Clustering scRNAseq by genotypes

✭ 88

python rust Singularity bioinformatics genomics computational-biology scrna-seq scrnaseq scrna-seq-analysis

6. naked-singularity

A repository of definition files for bootstrapping Singularity containers around the software applications, frameworks, and libraries you need to run on high-performance computing systems.

✭ 47

Singularity shell Dockerfile

7. jupyter-casa

A Jupyter kernel for CASA

✭ 21

Jupyter Notebook python Dockerfile Singularity shell

8. fml

Fused Matrix Library

✭ 24

C++Cuda c Makefile Singularity Dockerfile hpc matrix linear-algebra mpi cuda scalapack blas

9. Container Tutorial

Deep dive into containerizing scientific apps.