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matamMapping-Assisted Targeted-Assembly for Metagenomics
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SemiBinNo description or website provided.
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awesome-geneticsA curated list of awesome bioinformatics software.
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peppyProject metadata manager for PEPs in Python
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crazydocRead DNA sequences from colourful Microsoft Word documents
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miccamicca - MICrobial Community Analysis
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block-alignerSIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
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chromapFast alignment and preprocessing of chromatin profiles
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ccsCCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
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conda-env-builderBuild and maintain multiple custom conda environments all in once place.
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polyRADGenotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
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fermikitDe novo assembly based variant calling pipeline for Illumina short reads
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mitreThe Microbiome Interpretable Temporal Rule Engine
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tiptoftPredict plasmids from uncorrected long read data
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perbasePer-base per-nucleotide depth analysis
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RNAseq titration resultsCross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
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geneviewGenomics data visualization in Python by using matplotlib.
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flexidotHighly customizable, ambiguity-aware dotplots for visual sequence analyses
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virnetVirNet: A deep attention model for viral reads identification
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genomediscoSoftware for comparing contact maps from HiC, CaptureC and other 3D genome data.
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StackedDAEStacked Denoising AutoEncoder based on TensorFlow
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argparse2tooltransparently build CWL and Galaxy XML tool definitions for any script that uses argparse
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bio toolsUseful bioinformatic scripts
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docker-builds📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
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SumStatsRehabGWAS summary statistics files QC tool
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