365 Open source projects that are alternatives of or similar to cellfinder

Automated 3D brain registration with support for multiple species and atlases.

A lightweight python module to interact with atlases for systems neuroscience

Automated mouse atlas propagation

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

Lattice light-sheet post-processing utility.

Sources for the ITKSoftwareGuide.

Segmentation of 3D shapes in a common anatomical space

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Python 3 library for analysis of neuroanatomical data

All things Miniscope v4

medical image visualization library and development toolkit

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

A multipurpose tool for medical physics.

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Discover, install, and share napari plugins

No description or website provided.

A curated list of awesome cytodata resources

Symfony 4 by Samples is a personal project in which I will be creating small demos with tutorial in which to learn the symfony framework 4. Each of the samples contains a README.md file that indicates the purpose of the sample plus an step by step guide to reproduce it. Basic topics, login and register form, authentication, webpack encore, sass…

MATLAB/Octave GIfTI Library

Axon/Myelin segmentation using Deep Learning

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

2D/3D registration between CT/MRI or STL models and X-ray images (November 2018)

Some GIMP scripts

Dynamic Time Warping in Python / C (using ctypes)

A small microservice for managing user registrations, password changes and issue access tokens

Curate, visualize, annotate, and share your behavioral ephys data using Python

Simple user registration package based on Django Rest Framework. DRF Registration - The easy way to generate registration RESTful APIs

Python samples for Micro-Manager: image acquisition and microscope control system

DeepI2P: Image-to-Point Cloud Registration via Deep Classification. CVPR 2021

A Perspective-n-Points-and-Lines method.

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

📊 Gene expression in neuroexpresso database

Nuerapse simulations for SNNs

Deep learning in a spiking neural network using segregated dendrites.

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

NEURON User Interface

Spatial Single Cell Analysis in Python

Cookbook examples for the Insight Toolkit documented with Sphinx

An R package for conducting co-localization analysis. Edit

Cython bindings for fpzip, a floating point image compression algorithm.

A python library for advanced lattice light-sheet image analysis

Tools and libraries that deal with the creation and processing of images.

Speed up coding/extending image analysis in Python.

Open Delmic Microscope Software

Super-Resolution imaging with Convolutional Neural Network library for G++, Non-OpenCV model.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

I/O operations for OME-TIFF files in Julia

Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

Handles OAuth and stores slack token

Code Generation Framework For NEURON MODeling Language

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

[ACM MM 2022] You Only Hypothesize Once: Point Cloud Registration with Rotation-equivariant Descriptors

User Management Package for Neos and Flow

native Python dataclasses for the OME data model

Software platform for clinical neuroimaging studies

Official Python implementation of the 'Sparse deconvolution'-v0.3.0