404 Open source projects that are alternatives of or similar to immunedb

Curated list of bioinformatics formats and publications

3D printed sculpture of a DNA molecule, showing my own genome

Introduction to the Unix Shell for biologists

Bystro genetic analysis (annotation, filtering, statistics)

The Ontology for Biomedical Investigations

A Python platform for Structural Bioinformatics

Mapping-Assisted Targeted-Assembly for Metagenomics

Mulled - Automatized Containerized Software Repository

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

MView extracts and reformats the results of a sequence database search or multiple alignment.

DOM Text Based Multiple Sequence Alignment Library

A curated list of resources for machine learning for small-molecule drug discovery

exploratory and interactive microbiome analyses based on heatmaps

Version 5 of the CAFE phylogenetics software

No description or website provided.

Feature extraction algorithm for genomic data

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

🎯 Human transcription factor target genes.

micca - MICrobial Community Analysis

Ploidy agnostic phasing pipeline and algorithm

A curated list of awesome bioinformatics software.

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

📊 Identify cell types and pathways affected by genetic risk loci.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

API for linked biological knowledge

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

Golang for Bioinformatics

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

A Kotlin DSL and library to create and plot RNA 2D structures

Project metadata manager for PEPs in Python

Open source Java library for computational proteomics

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

An interactive web portal for exploring immuno-oncology data

BACNET is a Java based platform to develop website for multi-omics analysis

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

Per-base per-nucleotide depth analysis

Streamlining SLAM-seq analysis with ultra-high sensitivity

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

An R package for reproducible and automated ADMIXTOOLS analyses

Genomics data visualization in Python by using matplotlib.

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

MMseqs2 app to run on your workstation or servers

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

GRAph-based Finding of Individual Motif Occurrences

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Assembling the cause of phenotypes and genotypes from NGS data

The BridgeDb Library source code

GWAS summary statistics files QC tool

Stacked Denoising AutoEncoder based on TensorFlow

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

The Microbiome Interpretable Temporal Rule Engine

Phylogenetic trees in Julia

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

My own tools code for NGS data analysis (Next Generation Sequencing)