467 Open source projects that are alternatives of or similar to platon

Rapid determination of appropriate reference genomes.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Data intensive science for everyone.

Tools to process and analyze deep sequencing data.

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Collection of scripts for bacterial genomics

Java utilities for Bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

UGENE is free open-source cross-platform bioinformatics software

Software for prediction of plasmid sequences in metagenomic assemblies

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Project metadata manager for PEPs in Python

(No maintenance) Detect gene fusion directly from raw fastq files

A robust model for quantitative comparison of ChIP-Seq data sets.

Tools for working with genomic and high throughput sequencing data.

Method to optimally select samples for validation and resequencing

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Official code repository for GATK versions 4 and up

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

NGLess: NGS with less work

A package for designing compact and comprehensive capture probe sets.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

R package for analyzing single-cell RNA-seq data

C library for high-throughput sequencing data formats

A scalable bacterial genome assembly, annotation and analysis pipeline

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A simplified pipeline for ctDNA sequencing data analysis

No description or website provided.

MMseqs2 app to run on your workstation or servers

A fast 23andMe genome text file parser, now superseded by arv

A D library for computational biology and bioinformatics

De novo genome assembly and multisample variant calling

📊 Identify cell types and pathways affected by genetic risk loci.

Phylogenetic trees in Julia

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

Predict plasmids from uncorrected long read data

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

WebLogo 3: Sequence Logos redrawn

The Ontology for Biomedical Investigations

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Examples using Clustergrammer2 to explore high-dimensional datasets.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

VirNet: A deep attention model for viral reads identification

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

micca - MICrobial Community Analysis

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

🚦 Run Picard on BAM files and collate 90 metrics into one file.

De novo assembly based variant calling pipeline for Illumina short reads

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

This library tackles the construction and efficient execution of computational chemistry workflows

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

BACNET is a Java based platform to develop website for multi-omics analysis

Introduction to the Unix Shell for biologists