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Top 10 biomedical open source projects

A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries

✭ 13

C++python java CMake shell c hpc hemodynamics biomedical lattice-boltzmann blood-vessels

Collection of various biomedical data models in parseable formats.

✭ 23

schema csv vocabulary biomedical data-models

🤖 PyTorch toolkit for biomedical imaging ❤️

✭ 48

python Jupyter Notebook deep-learning models pytorch datasets biomedical biomedical-imaging

PDD Graph : Bridging MIMIC-III and Linked Data Cloud

✭ 31

CSS emr icu patient drugs ehr diseases linked-open-data biomedical rdf-store

Multi-modal Image Registration And Connectivity anaLysis

✭ 23

python shell ImageJ Macro network neuroscience mri connectivity neuroimaging image-segmentation brain image-registration biomedical clarity atlases

Flexible and powerful platform for biomedical information extraction from text

✭ 37

javascript java HTML text-mining information-extraction named-entity-recognition biomedical concept-extraction

Weakly supervised medical named entity classification

✭ 55

python Jupyter Notebook text-classification ontology weak-supervision ner biomedical umls bert weakly-supervised-learning pseudo-labeling learning-with-noisy-labels umls-metathesaurus

BioGrakn Knowledge Graph

✭ 169

bioinformatics knowledge-graph knowledge-discovery biomedical biograkn

GEANet-BioMed-Event-Extraction

Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

✭ 52

python perl Jupyter Notebook shell natural-language-processing deep-learning event-extraction biomedical bert multitask-learning covid-19 cord-19

Atrial-Fibrillation-Detection-Blood-Pressure-Monitor-Oscillometric-Method-

Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)

✭ 28

c C++assembly stm32 bpm stm32f4 pid-control biomedical biomedical-engineering blood-pressure atrial-fibrillation pid-codes biomedical-signal-processing blood-pressure-monitor blood-pressure-measurment atrial-fibrillation-detection mercury-manometer motor-drive

1-10 of 10 biomedical projects