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Top 66 sequencing open source projects

bac-genomics-scripts

Collection of scripts for bacterial genomics

✭ 39

perl shell science unix opensource bioinformatics annotation genomics ngs sequencing computational-biology microbial-genomics blast microbiology mlst bioperl scripts-collection

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

✭ 73

C++sequencing alignment crispr-analysis variant-calling pcr tracy crispr-cas9 sanger-chromatograms indel-discovery chromatogram sanger-trace-alignment sanger-sequencing pcr-products genetic-engineering indel

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

✭ 21

r python Dockerfile shell quality-control cancer coverage-report sequencing next-generation-sequencing cancer-genomics alignment quality-assurance command-line-tool bam clinical-decision-support pathogenic-variants sequencing-coverage pathogenic-loci

HMMRATAC peak caller for ATAC-seq data

✭ 86

java shell machine-learning sequencing peak-caller atac-seq peak-detection

xHLA: Fast and accurate HLA typing from short read sequence data

✭ 84

Jupyter Notebook r perl python genomics sequencing variants variant-calling hla-typing

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

61-66 of 66 sequencing projects