238 Open source projects that are alternatives of or similar to TransPi

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Reference-based transcript discovery from long RNA read

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

A tool to identify, orient, trim and rescue full length cDNA reads

just annotate it, dammit!

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

FEELnc : FlExible Extraction of LncRNA

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Pipeline for annotating genomes using long read transcriptomics data with pinfish

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

GREIN : GEO RNA-seq Experiments Interactive Navigator

A toolkit project to enable you to build annotation processors more easily

MERlin is an extensible analysis pipeline applied to decoding MERFISH data

Dart and Flutter sealed class generator and annotations, with match methods and other utilities. There is also super_enum compatible API.

A graphical user interface for distributed data processing of high throughput genomics

A lightweight tool for labeling 3D bounding boxes in point clouds.

Differential expression analysis for single-cell RNA-seq data.

Generate documentation from annotated Ansible Playbooks and Roles

Fast and accurate gene fusion detection from RNA-Seq data

Annotation-based multifunctional command handler framework for JDA & Javacord.

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Tools, documentation and resources for creating front-end pages and apps in Hypothesis

CWL tools and workflows for GGR

Social Media Mining Toolkit (SMMT) main repository

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

The official tool for transforming doccano format into common dataset formats.

💾 📃 "Reads to report" for public health and clinical microbiology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

scRNA-seq data visualization from scrattch

Reduce repetitive inheritance works in OOP world using @MethodScope.

Next Generation of Apex Development

Skip your PhpSpec examples through annotations

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

lightweight typescript retry decorator with 0 dependency.

Scripts to import your FeatureCounts output into DEXSeq

One-click image sorting/labelling script

easy storage Object on SharedPreferences

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

BACTpipe: An assembly and annotation pipeline for bacterial genomics

Single cell analysis in the browser

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

a neovim comment and annotation plugin using coroutine

An automated RNA-seq pipeline using Nextflow

📊 Graphical User Interface for TCC package

Processing of single cell RNAseq data for the recovery of TCRs in python

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Python modules and scripts for working with Concrete, a data serialization format for NLP

a data mediator framework bind callbacks for any property

Differential Gene Correlation Analysis

OpenCV based DNN Object Detection Library for Openframeworks

Multi-omics analysis protocols by Lyu.

Python library for automatic analysis of Ancient Greek hexameter. The algorithm uses linguistic rules and finite-state technology.

Collection of scripts for bacterial genomics

Deep Learning based cell composition analysis with Scaden.

Lightweight and Fast; RNA-seq quantification at the event-level

A Rails application for biological ontologies