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Top 17 singularity open source projects

Singularity: Application containers for Linux

✭ 2,290

go c shell linux containers cloud-native parallel science container portable hpc reproducible-science reproducible singularity singularity-container portability rootless-containers

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

✭ 84

Dockerfile perl shell docker dockerfiles bioinformatics containers singularity

An example GitHub Action (CI) to build a Singularity container

✭ 46

Singularity container singularity singularity-ci github-ci

Close assembly gaps using long-reads at high accuracy.

✭ 39

d shell python docker bioinformatics snakemake cluster singularity dub pacbio genome-assembly daligner long-reads gap-filling close-assembly-gaps damapper

software to generate a reproducible container with a battery of experiments

✭ 29

python HTML TeX shell CSS javascript battery reproducible container singularity psychology experiments expfactory experiment-factory

interactive Multi Objective K-mer Analysis

✭ 19

javascript C++typescript HTML c python machine-learning gui angular singularity data-analysis k-mer rna-seq-analysis

server for storage and management of singularity images

✭ 96

javascript HTML python CSS TeX shell registry containers management singularity singularity-containers singularityhub

ngc-container-environment-modules

Environment modules for NGC containers

✭ 19

lua singularity lmod ngc

nf-hack17-tutorial

Nextflow basic tutorial for newbie users

✭ 32

Nextflow docker bioinformatics tutorial genomics singularity

dicom-containers

singularity and Docker containers to easily get started with common dicom tools

✭ 18

Dockerfile shell docker container dicom singularity singularity-container pydicom dcm2k pynetdicom

Port Forwarding Utility

✭ 41

shell ssh jupyter hpc notebook sherlock singularity forwarding ssh-forwarding

Robust-Hexahedral-Re-Meshing

Hex-mesh simplification and optimization

✭ 36

C++CMake singularity simplification hexahedral-mesh global-structure

connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

✭ 45

HTML python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv

scientific filesystem: a filesystem organization for scientific software and metadata

✭ 30

python shell Dockerfile docker metadata organization containers container singularity standard scientific-filesystems

Singularity-tutorial

Singularity 101

✭ 31

tutorial hpc containers gpu mpi singularity rootless-containers

HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit

✭ 74

javascript shell Dockerfile Singularity graphql docker postgres cloud mongodb singularity postgis healthcare baas parse-server hipaa hacktoberfest carekit backend-as-a-service gdpr parse-dashboard mbaas

Singularity Global Client for container management

✭ 13

python shell client singularity singularity-container singularity-hub singularity-registry

1-17 of 17 singularity projects