11 open source projects by nf-core

ATAC-seq peak-calling, QC and differential analysis pipeline

DEPRECIATED! Please use nf-core/tools instead

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Repository to host tool-specific module files for the Nextflow DSL2 community!

Precision HLA typing from next-generation sequencing data

RNA-seq analysis pipeline for detection gene-fusions

Nanopore demultiplexing, QC and alignment pipeline

A single-cell RNAseq pipeline for 10X genomics data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Analysis of Chromosome Conformation Capture data (Hi-C)

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets