All Categories → Science → reproducibility

Top 94 reproducibility open source projects

mlr3-learndrake

Template for using mlr3 with drake

✭ 18

HTML SCSS Less CSS r javascript workflow machine-learning reproducibility drake mlr3

researchcompendium

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

✭ 26

r TeX reproducible-research reproducible-science reproducibility compendium

restlessdata.com.au/ggtrack

✭ 39

r tracking ggplot2 qrcode rstats reproducibility

Catalyst.Classification

✭ 35

shell python Dockerfile Makefile docker machine-learning deep-learning pipeline image-processing pytorch classification image-classification reproducibility catalyst augmentation focal-loss classification-pipeline

Reproducible Bayesian data analysis pipelines with targets and cmdstanr

✭ 31

r statistics high-performance-computing make rstats bayesian stan reproducibility targets rstats-package r-targetopia

ReproducibleScience

Short course on reproducible science: what, why, how

✭ 23

RMarkdown reproducible-research rmarkdown reproducible-science reproducibility

Purely functional build system and package manager

✭ 173

go python typescript HCL shell Makefile package-manager build-system reproducibility bramble

open-solution-googleai-object-detection

Open solution to the Google AI Object Detection Challenge 🍁

✭ 46

python Jupyter Notebook challenge data-science machine-learning deep-neural-networks deep-learning pipeline reproducible-research pipeline-framework object-detection reproducibility reproducible-experiments mask-rcnn detection-network retina-net google-ai-challange

Open Science, Open Data, Open Source

✭ 23

TeX python open-source bibliography gitbook open-data open-access open-science reproducibility mendeley-library

targets-minimal

A minimal example data analysis project with the targets R package

✭ 50

r workflow data-science statistics pipeline reproducible-research high-performance-computing rstats reproducibility targets

my Linux Configuration

✭ 23

shell Nix Vim Script haskell c emacs lisp linux dotfiles zsh nix emacs nixos configuration xmonad reproducibility neo2

Reproducibilidad

Reproducible Science: what, why, how

✭ 39

RMarkdown data-science version-control rmarkdown reproducible-science reproducibility

A collection of portable workflows, automation recipes and components for MLOps in a unified CK format. Note that this repository is outdated - please check the 2nd generation of the CK workflow automation meta-framework with portable MLOps and DevOps components here:

✭ 15

python C++shell CSS Jupyter Notebook c machine-learning automation optimization artificial-intelligence open-science systems reproducibility workflows portability co-design reusability mlops

My nix configuration(s), using flakes. It's my laptop, it's my servers, it's my everything, in code.

✭ 44

Nix Vim Script CSS shell javascript HTML Makefile dotfiles nix nixos infrastructure-as-code reproducibility flakes

Capture all information throughout your model's development in a reproducible way and tie results directly to the model code!

✭ 81

Jupyter Notebook python CSS data-science exploration reproducibility model-development

lightning-hydra-template

PyTorch Lightning + Hydra. A very user-friendly template for rapid and reproducible ML experimentation with best practices. ⚡🔥⚡

Experiments logging & visualization

✭ 49

python infrastructure machine-learning research reinforcement-learning deep-learning tensorflow keras pytorch reproducibility experiment-track

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

✭ 32

python HTML reproducible-research reproducible-science reproducibility biobank uk-biobank

The collaboration workspace for Machine Learning

✭ 1,409

kotlin javascript python SCSS shell ruby data-science machine-learning deep-learning mxnet tensorflow models machine-learning-algorithms pytorch artificial-intelligence deeplearning reproducibility mlops mlops-environment

Portable automation meta-framework to manage, describe, connect and reuse any artifacts, scripts, tools and workflows on any platform with any software and hardware in a non-intrusive way and with minimal effort. Try it using this tutorial to modularize and automate ML Systems benchmarking from the Student Cluster Competition at SC'22:

✭ 501

python Dockerfile C++shell c HTML api cli productivity open-source workflow devops machine-learning automation cross-platform portable plugins systems artifacts reuse reproducibility modularization mlops

Prepare reproducible R Markdown posters

✭ 68

r template poster reproducibility

Reproducibility for Humans: A lightweight tool to perform reproducible machine learning experiment.

✭ 25

python Jupyter Notebook HTML machine-learning dask reproducibility

Data Analysis Workflows & Reproducibility Learning Resources

✭ 108

workflow tooling reproducible-science data-analysis reproducibility reproducible-data-science

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

✭ 56

r python rna-seq snakemake reproducibility kallisto differential-expression sleuth sciworkflows

EasyGitianBuilder

🔨 Gitian Building made simpler on any Windows Debian/Ubuntu MacOS with Vagrant, lxc, and virtualbox

✭ 18

shell powershell vagrant bitcoin cryptocurrency coin reproducibility reproducible-builds gitian virtualbox-vm

binderhub-deploy

Deploy a BinderHub from scratch on Microsoft Azure

✭ 27

shell python Dockerfile docker cloud binder reproducible-research azure reproducibility binderhub hut23

Coding Standards for the USC Biostats group

✭ 33

HTML javascript CSS r C++shell hpc reproducible-research standards reproducibility

reproducibility-guide

⛔ ARCHIVED ⛔

✭ 119

HTML javascript CSS r reproducible-research reproducibility reproducibility-guide

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

✭ 1,211

python benchmarking reproducible-research pytorch comparison vae pixel-cnn reproducibility beta-vae vae-gan normalizing-flows variational-autoencoder vq-vae wasserstein-autoencoder vae-implementation vae-pytorch

Pythonic functions for creating and enhancing Hydra applications

✭ 165

python machine-learning scalable deep-learning configuration pytorch reproducible-science machinelearning configurable reproducibility yaml-configuration dynamic-configuration dataclasses pytorch-lightning

synthesizing-robust-adversarial-examples

My entry for ICLR 2018 Reproducibility Challenge for paper Synthesizing robust adversarial examples https://openreview.net/pdf?id=BJDH5M-AW

✭ 60

Jupyter Notebook machine-learning reproducibility adversarial-machine-learning adversarial-example

Code related to Neuroimaging Analysis Replication and Prediction Study

✭ 31

HTML Jupyter Notebook python r Makefile Dockerfile neuroimaging reproducibility

targets-tutorial

Short course on the targets R package

✭ 87

r workflow data-science pipeline reproducible-research make rstats r-package reproducibility targets

creating optimal conditions for reproducibility

✭ 52

r workflow reproducible-research tidyverse reproducibility

61-94 of 94 reproducibility projects