nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

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python detection medical medical-imaging medical-image-computing 3d-object-detection pytorch-implementation retina-unet

kits19-challenge

Kidney Tumor Segmentation Challenge 2019

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python deep-learning pytorch medical-imaging semantic-segmentation kits19 miccai-2019

CheXbert

Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT

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python natural-language-processing deep-learning medical-imaging radiology bert

Machine-Learning-in-Medical-Imaging--U-Net

TUM_MLMI_SS16: Convolutional Neural Network using U-Net architecture to predict one modality of a brain MRI scan from another modality.

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matlab python deep-learning medical-imaging convolutional-neural-networks matconvnet

subpixel-embedding-segmentation

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

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python shell machine-learning computer-vision deep-learning pytorch mri medical-imaging segmentation ucla atlas lesion-segmentation stroke-lesion ischemic-stroke

bisqueUCSB

BisQue is an ML Platform for storing, analyzing, and visualizing your data all in the browser.

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Jupyter Notebook javascript python matlab C++java docker kubernetes threejs machine-learning bioinformatics computer-vision deep-learning image-processing medical-imaging cloud-computing

CS-Net

CS-Net (MICCAI 2019) and CS2-Net (MedIA 2020)

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python deep-learning pytorch medical-imaging segmentation

monai-deploy

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

GateContrib

User-oriented public repository of Gate (macros, examples and user contributions)

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C++c TeX python CMake shell Makefile medical-imaging pet physics-simulation gate medical-physics opengate radiation-therapy spect

CNN-DICOM-Segmentation

DICOM Image Segmentation with CNNs in Tensorflow

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Jupyter Notebook tensorflow jupyter-notebook cnn medical-imaging convolutional-neural-networks image-segmentation dicom-images deconvolution deconvnet head-ct-scans

Malaria-Detection-using-Keras

Malaria Detection using Deep Learning from Images made available publicly from NIH

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python HTML javascript CSS Dockerfile shell computer-vision deep-learning artificial-intelligence medical-imaging

GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch

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python Roff machine-learning framework deep-learning regression pytorch medical-imaging classification segmentation data-augmentation biomedical-image-processing medical-informatics medical-image-analysis clinical-workflow

cucim

No description or website provided.

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Jupyter Notebook python C++CMake shell c computer-vision gpu cuda image-processing nvidia medical-imaging segmentation image-analysis microscopy digital-pathology image-data multidimensional-image-processing

3D-GuidedGradCAM-for-Medical-Imaging

This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input to the Guided-gradCAM model.

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