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Top 176 medical-imaging open source projects

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

✭ 27

python deep-learning medical-imaging domain-adaptation

Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"

✭ 20

python jupyter-notebook deep-learning keras convolutional-neural-networks medical-imaging

Im2p

Tensorflow implementation of paper: A Hierarchical Approach for Generating Descriptive Image Paragraphs

✭ 15

lua deep-learning tensorflow medical-imaging image-captioning

Medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

✭ 917

python deep-learning object-detection deep-neural-networks segmentation detection semantic-segmentation medical-imaging 3d-models

Mousemorph

Tools for MRI mouse brain morphometry

✭ 19

python image-processing science medical-imaging

Ganseg

Framework for medical image segmentation using deep neural networks

✭ 18

python deep-learning segmentation medical-imaging

Slicergitsvnarchive

Multi-platform, free open source software for visualization and image computing.

✭ 896

python cross-platform image-processing qt segmentation medical-imaging 3d-printing registration neuroimaging

Deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

✭ 809

python deep-learning machine-learning convolutional-neural-networks neural-networks medical-imaging

Itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

✭ 801

python cpp hacktoberfest open-source scientific-computing medical-imaging reproducible-research image-analysis open-science

Medicaltorch

A medical imaging framework for Pytorch

✭ 716

python deep-learning machine-learning pytorch computer-vision medical-imaging

Torchio

Medical image preprocessing and augmentation toolkit for deep learning

✭ 708

python deep-learning machine-learning pytorch computer-vision convolutional-neural-networks cnn segmentation medical-imaging data-augmentation augmentation

Fo Dicom

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

✭ 674

netcore nuget portable medical-imaging jpeg mono dicom dot-net medical xamarin-android unity-3d xamarin-ios pcl

Dicom

⚡High Performance DICOM Medical Image Parser in Go.

✭ 643

go golang parser streaming real-time medical-imaging dicom medical

All About The Gan

All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN

✭ 630

python deep-learning pytorch tensorflow neural-network gan classification generative-adversarial-network segmentation detection paper unsupervised-learning medical-imaging reconstruction arxiv adversarial-networks

Breast cancer classifier

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

✭ 614

jupyter-notebook deep-learning pytorch tensorflow neural-network classification medical-imaging pretrained-models

Kaggle ndsb2017

Kaggle datascience bowl 2017

✭ 599

python deep-learning machine-learning tensorflow keras kaggle medical-imaging

Pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

✭ 563

python jupyter-notebook docker medical-imaging feature-extraction

Medicalzoopytorch

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

✭ 546

python deep-learning pytorch segmentation resnet medical-imaging unet densenet

Robot Surgery Segmentation

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

✭ 528

python jupyter-notebook deep-learning pytorch computer-vision medical-imaging image-segmentation

Ctk

A set of common support code for medical imaging, surgical navigation, and related purposes.

✭ 498

python open-source cross-platform qt medical-imaging dicom osgi plugin-manager

Dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

✭ 417

python machine-learning segmentation tracking medical-imaging registration neuroimaging

Cornerstonetools

A framework for tools built on top of Cornerstone.

✭ 411

javascript hacktoberfest medical-imaging dicom

U Net Brain Tumor

U-Net Brain Tumor Segmentation

✭ 399

python tensorflow medical-imaging unet tensorlayer

Learning Deep Learning

Paper reading notes on Deep Learning and Machine Learning

✭ 388

jupyter-notebook deep-learning machine-learning computer-vision reinforcement-learning cnn paper point-cloud medical-imaging medical

U Net

U-Net: Convolutional Networks for Biomedical Image Segmentation

✭ 374

python keras deep-neural-networks medical-imaging image-segmentation convolutional-networks

Mitk

The Medical Imaging Interaction Toolkit.

✭ 360

medical-imaging dicom

Weasis

Weasis is a DICOM viewer available as a desktop application or as a web-based application.

✭ 311

java viewer medical-imaging dicom

Medical Datasets

tracking medical datasets, with a focus on medical imaging

✭ 296

list learning collection datasets medical-imaging medical

Xvision

Chest Xray image analysis using Deep learning !

✭ 304

python deep-learning tensorflow computer-vision transfer-learning medical-imaging

Cascaded Fcn

Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"

✭ 296

jupyter-notebook deep-learning deep-neural-networks segmentation semantic-segmentation caffe medical-imaging fully-convolutional-networks

Lungmask

Automated lung segmentation in CT

✭ 279

python medical-imaging

Slicer

Multi-platform, free open source software for visualization and image computing.

✭ 263

python image-processing qt segmentation medical-imaging 3d-printing registration neuroimaging

Diabetic-Retinopathy-Detection

DIAGNOSIS OF DIABETIC RETINOPATHY FROM FUNDUS IMAGES USING SVM, KNN, and attention-based CNN models with GradCam score for interpretability,

✭ 31

Jupyter Notebook machine-learning deep-learning sklearn image-processing medical-imaging svm-classifier diabetic-retinopathy-detection knn-classification gradcam

BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

istn

Image-and-Spatial Transformer Networks

✭ 86

python deep-learning medical-imaging image-registration spatial-transformer-networks

dataset-histology-landmarks

Dataset: landmarks for registration of histology images

✭ 26

python shell dataset medical-imaging landmarks image-registration histology anhir

AE-CNN

ICVGIP' 18 Oral Paper - Classification of thoracic diseases on ChestX-Ray14 dataset

Retinal-Disease-Diagnosis-With-Residual-Attention-Networks

Using Residual Attention Networks to diagnose retinal diseases in medical images

✭ 14

python machine-learning deep-learning tensorflow keras medical-imaging resnet convolutional-neural-networks attention-mechanism residual-networks

neurdicom

RESTful PACS server with plugins

✭ 97

python django tensorflow dicom medical-imaging tornado mri-images pacs plugin-system dicomweb medical-image-processing

XNet

CNN implementation for medical X-Ray image segmentation

✭ 71

Jupyter Notebook python medical-imaging segmentation small-dataset

COVID-19-AI

Collection of AI resources to fight against Coronavirus (COVID-19)

fw4spl

Main repository for fw4spl

✭ 30

C++c CMake python javascript CSS medical-imaging vtk itk vr-render

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

✭ 56

python quality-control neuroscience medical-imaging registration alignment neuroimaging outlier-detection fmri mri-images cortex qc outlier-removal anatomical-mri freesurfer

coursera-ai-for-medicine-specialization

Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai

mri-deep-learning-tools

Resurces for MRI images processing and deep learning in 3D

✭ 56

detection pytorch mri medical-imaging classification segmentation

rocket viewer

This simple and generic viewer allows you to visualize different kinds of data such as medical and biological images, 3D surfaces, electric signals (ECGs) and documents.

✭ 22

javascript CSS HTML react threejs tiff dicom medical-imaging vtk cornerstone

open-kbp

Develop dose prediction models for knowledge-based planning in radiotherapy

✭ 37

python Jupyter Notebook machine-learning deep-learning medical-imaging medical-physics

Dermatron

Dermatology focused medical records software, augmented with computer vision and artificial intelligence [Meteor packaged with Electron]

✭ 19

javascript HTML CSS shell meteor medical medical-imaging dermatology medical-image-processing

Musculoskeletal-Radiographs-Abnormality-Classifier

An implementation of MURA Dataset Towards Radiologist-Level Abnormality Detection in Musculoskeletal Radiographs

✭ 37

Jupyter Notebook python shell deep-learning keras pytorch medical-imaging

PETPVC

Partial Volume Correction in PET

✭ 29

C++CMake Nix Dockerfile medical-imaging pet-mr pvc partial-volume-correction positron-emission-tomography

LibAUC

An End-to-End Machine Learning Library to Optimize AUC (AUROC, AUPRC).

✭ 115

deep-learning tensorflow pytorch medical-imaging gcn melanoma graph-neural-networks auprc chexpert auroc auc-optimization

Improved-Wasserstein-GAN-application-on-MRI-images

Improved Wasserstein GAN (WGAN-GP) application on medical (MRI) images

✭ 23

python lasagne theano deep-learning medical-imaging generative-adversarial-network mri-images unsupervised-learning medical-images neuralnetwork wgan wasserstein-gan wgan-gp improved-wgan gan-lasagne

dwv-jqmobile

Medical image viewer using DWV (DICOM Web Viewer) and jQuery Mobile.

✭ 25

javascript lua HTML CSS jquery-mobile medical-imaging dwv dicom-web-viewer

MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.

✭ 249

python javascript java shell stylus CMake machine-learning deep-learning pytorch medical-imaging segmentation 3d active-learning 3d-slicer-extension monai

cuda spatial deform

A fast tool to do image augmentation on GPU(especially elastic_deform), can be helpful to research on Medical Image.

✭ 115

Cuda python CMake computer-vision cuda medical-imaging image-augmentation elastic-deform

medical image segmentation

Medical image segmentation ( Eye vessel segmentation)

✭ 90

python shell keras medical-imaging segmentation convolutional-neural-networks

Fundus Review

Official website of our paper: Applications of Deep Learning in Fundus Images: A Review. Newly-released datasets and recently-published papers will be updated regularly.

✭ 64

deep-learning medical-imaging retinal-images image-synthesis diabetic-retinopathy glaucoma lesion-segmentation age-related-macular-degeneration disease-diagnosis fundus-images blood-vessel-segmentation od-oc-segmentation

VNet

Prostate MR Image Segmentation 2012

✭ 54

python challenge bmp medical-imaging segmentation image-segmentation python35 vnet tensroflow prostate loss segmentation-network groupnormalization

modelhub

A collection of deep learning models with a unified API.

✭ 59

python deep-neural-networks deep-learning artificial-intelligence medical-imaging artificial-neural-networks medical-image-computing medical-image-processing

clara-dicom-adapter

DICOM Adapter is a component of the Clara Deploy SDK which facilitates integration with DICOM compliant systems, enables ingestion of imaging data, helps triggering of jobs with configurable rules and offers pushing the output of jobs to PACS systems.

✭ 31

C#ai dicom nvidia medical healthcare medical-imaging dotnet-core fo-dicom nvidia-clara

61-120 of 176 medical-imaging projects

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