Top 260 science open source projects

Models of COVID-19 outbreak trajectories and hospital demand

Operate and manipulate physical quantities in Python

A Django app for managing scientific publications.

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

Open-source software for volunteer computing and grid computing.

A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP or DODS).

An easy framework for drafting scientific documents: Write (Markdown), Compile (PDF, Word, HTML), Share.

A rust drawing library for high quality data plotting for both WASM and native, statically and realtimely 🦀 📈🚀

Database of optical constants

A mindmap summarising Deep Learning concepts.

UXF - Framework for creating human behaviour experiments in Unity

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Performance Software for Cyclists, Runners, Triathletes and Coaches

VAPOR is the Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers

Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.

Mendelable displays information about the elements of the periodic table in a modern and pleasant way.

Open-source library for analyzing the results produced by ABINIT

silx toolkit

🌈Scaffold genome sequence assemblies using linked read sequencing data

Provides a new artist for matplotlib to display a scale bar, aka micron bar.

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

the simple alchemistry library

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

A computer algebra system written in pure Python

Examples for the usage of LaTeX

Real-time position tracker for behavioral research

For running psychology and neuroscience experiments

Official code repository for GATK versions 4 and up

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

Distributed publishing platform and discussion network for scholars. Establishing an unenclosable scholarly commons.

Machine learning. Clustering by fast search and find of density peaks.

The Julia Programming Language

Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization

The main repository for the development of the evolution game Thrive.

A curated list of science- and engineering related repositories on GitHub and in neighboring counties

The core source repository for the Cherab project.

This project contains instructions to deploy the Global Azure Bootcamp 2019 Science Lab

Short names, big time savings – a collection of commands for the git operations you perform most often

Matrix laboratory

🚀 Provides equations in latex format from arxiv paper.

Tools for MRI mouse brain morphometry

Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

Data and analysis for the Splatter paper

Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations

Repository of publicly available talks by Leon Eyrich Jessen, PhD. Talks cover Data Science and R in the context of research

Data intensive science for everyone.

ObsPy: A Python Toolbox for seismology/seismological observatories.

Convert LaTeX documents into beautiful responsive web pages using LaTeXML.

Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.

PYBOSSA is the ultimate crowdsourcing framework (aka microtasking) to analyze or enrich data that can't be processed by machines alone.

ruptures: change point detection in Python

The code powering code.org and studio.code.org

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

Facilitating Open Science

The futuristic, fabulous and free desktop app for working with scientific literature 🔬 📖

A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.

Brian is a free, open source simulator for spiking neural networks.

Use the sensors in your mobile devices to perform science experiments. Science doesn’t just happen in the classroom or lab—tools like Science Journal let you see how the world works with just your phone.

Data Science Notebook on a Classification Task, using sklearn and Tensorflow.

Open Machine Learning