Top 138 neuroscience open source projects

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

NMA Computational Neuroscience course

Blackrock Microsystems Cerebus Link for Neural Signal Processing

A python implementation for a LogGabor filtering and pyramid representation

A Python-based simulation framework for bionic vision

Implementing a RL algorithm based upon a partially observable Markov decision process.

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Core methods and structures for neuroscience research in Julia.

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

Spiking neural network system

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Segmentation of 3D shapes in a common anatomical space

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

Example with Cortex V2 API

Train PyTorch Models using the Genetic Algorithm with PyGAD

Just Another Tool for Online Studies

A toolbox for inferring spikes from calcium traces.

Helping researchers in routine procedures for data collection

PyoMyo - Python Opensource Myo armband library

Resources for data driven neuroscientists.

One-Shot Object Appearance Learning using Spiking Neural Networks

A lightweight python module to interact with atlases for systems neuroscience

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

medical image visualization library and development toolkit

Multi-modal Image Registration And Connectivity anaLysis

AntroPy: entropy and complexity of (EEG) time-series in Python

Main TVB codebase

Automated 3D cell detection and registration of whole-brain images

Nuerapse simulations for SNNs

A package for data-driven validation of neuron and ion channel models using SciUnit

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

All things Miniscope v4

A virtual optogenetics laboratory

Keras for Science

📊 Gene expression in neuroexpresso database

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Code Generation Framework For NEURON MODeling Language

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

Software platform for clinical neuroimaging studies

MATLAB/Octave GIfTI Library

Python 3 library for analysis of neuroanatomical data

Deep learning in a spiking neural network using segregated dendrites.

Dynamic Time Warping in Python / C (using ctypes)

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Curate, visualize, annotate, and share your behavioral ephys data using Python

NEURON User Interface

Method container for computational neuroscience on brains.

Python-based module with spike sorter wrappers and a simple API for running them.

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

NeuroInformatics Database

Brain Dynamics Programming in Python

Automated 3D brain registration with support for multiple species and atlases.

Graph theory analysis of brain MRI data

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

Database for experimental neuroscience laboratories

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

An Awesome List of Cognitive Science Resources